Transcript: LINC02582:10

Basic information

LNCipedia transcript ID: LINC02582:10 
LNCipedia gene ID: LINC02582
RefSeq ID: NR_038340
Location (hg19): chr18:70992176-71017124
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1176 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT059835; NR_038340; NR_038340.1
Alternative gene names: LOC100505817


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.5853 non-coding 
CPAT coding probability 28.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02582:10 no no no no

Available literature

  1. Xue (2017), A long non-coding RNA expression signature to predict survival of patients with colon adenocarcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMM21-4:4
4.0 lnc-TIMM21-4:4
4.1 lnc-TIMM21-4:4
5.0 lnc-TIMM21-4:4
5.1 LINC02582:3
5.2 LINC02582:10