Transcript: LINC02582:9

Basic information

LNCipedia transcript ID: LINC02582:9 
HGNC Gene Symbol: LINC02582    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2582
Ensembl Gene ID: ENSG00000261780
Ensembl Transcript ID: ENST00000563172
Location (hg19): chr18:70992176-71017113
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1165 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00026195; ENST00000563172.1; CTD-2354A18.1-001; OTTHUMT00000431629.1
Alternative gene names: XLOC_012714; linc-C18orf55-4; ENSG00000261780.2; CTD-2354A18.1; OTTHUMG00000176206.2; AC105243.1; LINC02582


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.5853 non-coding 
CPAT coding probability 28.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02582:9 no no no no

Available literature

  1. Xue (2017), A long non-coding RNA expression signature to predict survival of patients with colon adenocarcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TIMM21-4:1
3.1 lnc-TIMM21-4:1
4.0 lnc-TIMM21-4:1
4.1 lnc-TIMM21-4:1
5.0 lnc-TIMM21-4:1
5.1 LINC02582:2
5.2 LINC02582:9