Transcript: LINC02594:3

Basic information

LNCipedia transcript ID: LINC02594:3 
HGNC Gene Symbol: LINC02594    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2594
Ensembl Gene ID: ENSG00000267440
Ensembl Transcript ID: ENST00000593169
Location (hg19): chr17:41757641-41783252
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053872; ENST00000593169.1
Alternative gene names: ENSG00000267440.1; CTC-501O10.1; AC004149.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.5943 non-coding 
CPAT coding probability 28.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02594:3 no no no no

Available literature

  1. Liu (2018), A panel consisting of three novel circulating lncRNAs, is it a predictive tool for gastric cancer?, J. Cell. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf105-2:1
4.0 lnc-C17orf105-2:1
4.1 lnc-C17orf105-2:1
5.0 lnc-C17orf105-2:1
5.1 LINC02594:2
5.2 LINC02594:3