Transcript: LINC02596:6

Basic information

LNCipedia transcript ID: LINC02596:6 
HGNC Gene Symbol: LINC02596    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2596
Ensembl Gene ID: ENSG00000233431
Ensembl Transcript ID: ENST00000457706
Location (hg19): chr1:21912965-21917680
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 821 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000166; ENST00000457706.1; RP11-63N8.3-001; OTTHUMT00000092373.1; NONHSAT001428
Alternative gene names: XLOC_000087; linc-LDLRAD2-2; ENSG00000233431.1; RP11-63N8.3; OTTHUMG00000037843.1; AL359815.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.4258 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02596:6 no no no no

Available literature

  1. Fei (2018), Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis., Int. J. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALPL-1:1
3.1 lnc-ALPL-1:1
4.0 lnc-ALPL-1:1
4.1 lnc-ALPL-1:1
5.0 lnc-ALPL-1:1
5.1 LINC02596:2
5.2 LINC02596:6