Transcript: LINP1:6

Basic information

LNCipedia transcript ID: LINP1:6 
LNCipedia gene ID: LINP1
Location (hg19): chr10:6779335-6782500
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2350 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223784.1|ENCT00000043387.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.7253 non-coding 
CPAT coding probability 4.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINP1:6 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA LINP1 regulates repair of DNA double-strand breaks in triple-negative breast cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL137145.1-5:3
5.0 lnc-AL137145.1-5:3
5.1 LINP1:3
5.2 LINP1:6