Transcript: LIPE-AS1:9

Basic information

LNCipedia transcript ID: LIPE-AS1:9 
HGNC Gene Symbol: LIPE-AS1    
HGNC Full Gene Name: LIPE antisense RNA 1
Ensembl Gene ID: ENSG00000213904
Ensembl Transcript ID: ENST00000594688
Location (hg19): chr19:42927907-43156171
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2383 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000594688.1
Alternative gene names: ENSG00000213904.4; LIPE-AS1; ENSG00000213904.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7138 non-coding 
CPAT coding probability 38.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LIPE-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC011497.1-2:7
4.0 LIPE-AS1:9
4.1 LIPE-AS1:9
5.0 LIPE-AS1:9
5.1 LIPE-AS1:9
5.2 LIPE-AS1:9