Transcript: LMO7DN-IT1:3

Basic information

LNCipedia transcript ID: LMO7DN-IT1:3 
LNCipedia gene ID: LMO7DN-IT1
Location (hg19): chr13:76452849-76455263
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 243 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00021569; ENST00000436872.1; RP11-332E3.2-001; OTTHUMT00000045307.1; NONHSAT034375
Alternative gene names: XLOC_010434; linc-CLN5-3; ENSG00000223458.1; RP11-332E3.2; OTTHUMG00000017094.1; TCONS_00021569


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.3661 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LMO7DN-IT1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LMO7-1:1
3.1 lnc-LMO7-1:1
4.0 LMO7DN-IT1:3
4.1 LMO7DN-IT1:3
5.0 LMO7DN-IT1:3
5.1 LMO7DN-IT1:3
5.2 LMO7DN-IT1:3