Transcript: LNCARSR:15

Basic information

LNCipedia transcript ID: LNCARSR:15 
LNCipedia gene ID: LNCARSR
Location (hg19): chr9:82132788-82147257
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 702 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00015837; ENST00000413352; ENST00000413352.1; RP11-375O18.2-002; OTTHUMT00000052783.1
Alternative gene names: XLOC_007747; linc-GNAQ-7; ENSG00000233086; RP11-375O18.2; ENSG00000233086.1; OTTHUMG00000020070.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.3569 non-coding 
CPAT coding probability 5.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCARSR:15 no no no no

Available literature

  1. Huang (2018), Long noncoding RNA lncARSR promotes hepatic cholesterol biosynthesis via modulating Akt/SREBP-2/HMGCR pathway., Life Sci.
  2. Zhang (2018), Long noncoding RNA lncARSR promotes hepatic lipogenesis via Akt/SREBP-1c pathway and contributes to the pathogenesis of nonalcoholic steatohepatitis., Biochem. Biophys. Res. Commun.
  3. Li (2017), Long Noncoding RNA lncARSR Promotes Doxorubicin Resistance in Hepatocellular Carcinoma via Modulating PTEN-PI3K/Akt Pathway., J. Cell. Biochem.
  4. Qu (2016), Exosome-Transmitted lncARSR Promotes Sunitinib Resistance in Renal Cancer by Acting as a Competing Endogenous RNA., Cancer Cell
  5. Qu (2016), A feed-forward loop between lncARSR and YAP activity promotes expansion of renal tumour-initiating cells., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GNAQ-4:5
3.1 lnc-GNAQ-3:4
4.0 lnc-GNAQ-3:4
4.1 lnc-GNAQ-3:4
5.0 lnc-GNAQ-3:4
5.1 LNCARSR:6
5.2 LNCARSR:15