Transcript: LNCPRESS1:13

Basic information

LNCipedia transcript ID: LNCPRESS1:13 
LNCipedia gene ID: LNCPRESS1
RefSeq ID: NR_110115
Location (hg19): chr7:100951621-100964430
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 740 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110115.1
Alternative gene names: LOC101927746


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.86 non-coding 
CPAT coding probability 29.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCPRESS1:13 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LNCPRESS1:13
5.1 LNCPRESS1:13
5.2 LNCPRESS1:13