Transcript: LNCPRESS1:15

Basic information

LNCipedia transcript ID: LNCPRESS1:15 
LNCipedia gene ID: LNCPRESS1
Location (hg19): chr7:100942829-100954290
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2350 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT122460
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.4494 non-coding 
CPAT coding probability 43.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LNCPRESS1:15 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNHIT1-1:2
4.0 lnc-ZNHIT1-1:2
4.1 lnc-ZNHIT1-1:2
5.0 lnc-ZNHIT1-1:2
5.1 LNCPRESS1:2
5.2 LNCPRESS1:15