Transcript: LNCPRESS1:17

Basic information

LNCipedia transcript ID: LNCPRESS1:17 
LNCipedia gene ID: LNCPRESS1
Location (hg19): chr7:100942894-100944551
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 756 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232301.1|ENST00000429254.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.6193 non-coding 
CPAT coding probability 26.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCPRESS1:17 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZNHIT1-1:7
5.0 lnc-ZNHIT1-1:7
5.1 LNCPRESS1:5
5.2 LNCPRESS1:17