Transcript: LNCPRESS1:18

Basic information

LNCipedia transcript ID: LNCPRESS1:18 
LNCipedia gene ID: LNCPRESS1
Location (hg19): chr7:100946068-100947875
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 827 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000093299.1|FTMT22700029777.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.6793 non-coding 
CPAT coding probability 7.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCPRESS1:18 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZNHIT1-1:8
5.0 lnc-ZNHIT1-1:8
5.1 LNCPRESS1:6
5.2 LNCPRESS1:18