Transcript: LNCPRESS1:25

Basic information

LNCipedia transcript ID: LNCPRESS1:25 
LNCipedia gene ID: LNCPRESS1
Ensembl Gene ID: ENSG00000232445
Ensembl Transcript ID: ENST00000419422
Location (hg19): chr7:100951627-100954266
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 705 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419422.1; RP11-132A1.4-001; OTTHUMT00000347448.1
Alternative gene names: ENSG00000232445.1; RP11-132A1.4; OTTHUMG00000157105.1; AC006329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.86 non-coding 
CPAT coding probability 45.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LNCPRESS1:25 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNHIT1-2:1
4.0 lnc-ZNHIT1-1:6
4.1 lnc-ZNHIT1-1:6
5.0 lnc-ZNHIT1-1:6
5.1 LNCPRESS1:14
5.2 LNCPRESS1:25