Transcript: LNCPRESS2:5

Basic information

LNCipedia transcript ID: LNCPRESS2:5 
LNCipedia gene ID: LNCPRESS2
Location (hg19): chr4:93176335-93198528
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3973 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT097428
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.7813 non-coding 
CPAT coding probability 39.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LNCPRESS2:5 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-9B6.1.1-1:3
4.0 lnc-RP11-9B6.1.1-1:3
4.1 lnc-RP11-9B6.1.1-1:3
5.0 lnc-RP11-9B6.1.1-1:3
5.1 LNCPRESS2:2
5.2 LNCPRESS2:5