Transcript: LNCPRESS2:6

Basic information

LNCipedia transcript ID: LNCPRESS2:6 
LNCipedia gene ID: LNCPRESS2
RefSeq ID: NR_125920
Location (hg19): chr4:93183649-93198453
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1225 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007429; NONHSAT097430; NR_125920; NR_125920.1
Alternative gene names: XLOC_004018; linc-TMSL3; LOC101929194


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.7813 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCPRESS2:6 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-9B6.1.1-1:1
3.1 lnc-RP11-9B6.1.1-1:1
4.0 lnc-RP11-9B6.1.1-1:1
4.1 lnc-RP11-9B6.1.1-1:1
5.0 lnc-RP11-9B6.1.1-1:1
5.1 LNCPRESS2:3
5.2 LNCPRESS2:6