Transcript: LNCSRLR:3

Basic information

LNCipedia transcript ID: LNCSRLR:3 
HGNC Gene Symbol: LNCSRLR    
HGNC Full Gene Name: lncRNA sorafenib resistance in renal cell carcinoma associated
Ensembl Gene ID: ENSG00000240032
Ensembl Transcript ID: ENST00000490375
Location (hg19): chr3:145784131-145786972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 709 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000490375.1; RP11-274H2.3-001; OTTHUMT00000355183.1
Alternative gene names: ENSG00000240032.1; RP11-274H2.3; OTTHUMG00000159416.1; LNCSRLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.5725 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCSRLR:3 no no no no

Available literature

  1. Xu (2017), Long noncoding RNA-SRLR elicits intrinsic sorafenib resistance via evoking IL-6/STAT3 axis in renal cell carcinoma., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLOD2-1:1
4.0 lnc-PLOD2-1:1
4.1 lnc-PLOD2-1:1
5.0 lnc-PLOD2-1:1
5.1 LNCSRLR:2
5.2 LNCSRLR:3