Transcript: LOH12CR2:2

Basic information

LNCipedia transcript ID: LOH12CR2:2 
LNCipedia gene ID: LOH12CR2
RefSeq ID: NR_024061
Location (hg19): chr12:12508342-12510001
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1538 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024061; NR_024061.1
Alternative gene names: LOH2CR12; LOH12CR2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.096 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LOH12CR2:2 no no no no

Available literature

  1. Montpetit (2004), Mutational and expression analysis of the chromosome 12p candidate tumor suppressor genes in pre-B acute lymphoblastic leukemia., Leukemia
  2. Montpetit (2002), A detailed transcriptional map of the chromosome 12p12 tumour suppressor locus., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007621.1-1:2
4.0 LOH12CR2:2
4.1 LOH12CR2:2
5.0 LOH12CR2:2
5.1 LOH12CR2:2
5.2 LOH12CR2:2