Transcript: LPP-AS2:2

Basic information

LNCipedia transcript ID: LPP-AS2:2 
HGNC Gene Symbol: LPP-AS2    
HGNC Full Gene Name: LPP antisense RNA 2
Ensembl Gene ID: ENSG00000270959
Ensembl Transcript ID: ENST00000605573
Location (hg19): chr3:187868994-187871845
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2852 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000605573.1
Alternative gene names: ENSG00000270959.1; LPP-AS2; ; MYCLo-5; MYCLo-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2194 non-coding 
CPAT coding probability 8.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LPP-AS2:2 yes no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCL6-8:2
4.0 LPP-AS2:2
4.1 LPP-AS2:2
5.0 LPP-AS2:2
5.1 LPP-AS2:2
5.2 LPP-AS2:2