Transcript: LPP-AS2:4

Basic information

LNCipedia transcript ID: LPP-AS2:4 
LNCipedia gene ID: LPP-AS2
Location (hg19): chr3:187866389-187871886
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5498 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000270959.1|HBMT00001016798.1
Alternative gene names: MYCLo-5; MYCLo-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.0854 non-coding 
CPAT coding probability 3.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LPP-AS2:4 yes no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LPP-AS2:4
5.0 LPP-AS2:4
5.1 LPP-AS2:4
5.2 LPP-AS2:4