Transcript: LRRC75A-AS1:42

Basic information

LNCipedia transcript ID: LRRC75A-AS1:42 
LNCipedia gene ID: LRRC75A-AS1
Location (hg19): chr17:16342332-16345047
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000475947
Alternative gene names: ENSG00000175061; NCRNA00188; MGC40157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -175.3781 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.411764706
orfFrame11.45067098
seqAAMEGHICQSLESAKAGTRFPGPQWGCANPRELGCKFVKNQHHVWQLSIGARSLP

In stringent set: no

Locus conservation

Locus conservation?
LRRC75A-AS1:42 no no no no

Available literature

  1. Wang (2018), A three‑lncRNA signature for prognosis prediction of acute myeloid leukemia in patients., Mol Med Rep
  2. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.
  3. Zhang (2014), Species-specific alternative splicing leads to unique expression of sno-lncRNAs., BMC Genomics
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPV2-1:4
3.1 lnc-TRPV2-1:7
4.0 LRRC75A-AS1:42
4.1 LRRC75A-AS1:42
5.0 LRRC75A-AS1:42
5.1 LRRC75A-AS1:42
5.2 LRRC75A-AS1:42