Transcript: LRRC8C-DT:40

Basic information

LNCipedia transcript ID: LRRC8C-DT:40 
LNCipedia gene ID: LRRC8C-DT
Location (hg19): chr1:90091481-90098492
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1376 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001572; NONHSAT004366
Alternative gene names: XLOC_000909; linc-GBP5-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.7903 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LRRC8C-DT:40 no no no no

Available literature

  1. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GBP5-2:6
3.1 lnc-GBP5-2:6
4.0 lnc-GBP5-2:6
4.1 lnc-GBP5-2:6
5.0 lnc-GBP5-2:6
5.1 LRRC8C-DT:13
5.2 LRRC8C-DT:40