Transcript: LUCAT1:17

Basic information

LNCipedia transcript ID: LUCAT1:17 
LNCipedia gene ID: LUCAT1
Location (hg19): chr5:90606658-90607529
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 259 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010989
Alternative gene names: XLOC_004924; linc-LYSMD3-2; SCAL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.7111 non-coding 
CPAT coding probability 11.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LUCAT1:17 no no no no

Available literature

  1. Thai (2013), Characterization of a novel long noncoding RNA, SCAL1, induced by cigarette smoke and elevated in lung cancer cell lines., Am. J. Respir. Cell Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARRDC3-1:13
3.1 lnc-ARRDC3-1:13
4.0 LUCAT1:17
4.1 LUCAT1:17
5.0 LUCAT1:17
5.1 LUCAT1:17
5.2 LUCAT1:17