Transcript: LUCAT1:5

Basic information

LNCipedia transcript ID: LUCAT1:5 
LNCipedia gene ID: LUCAT1
RefSeq ID: NR_103549
Location (hg19): chr5:90606731-90610219
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT102751; NR_103549; NR_103549.1
Alternative gene names: SCAL1; LUCAT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.3044 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LUCAT1:5 no no no no

Available literature

  1. Thai (2013), Characterization of a novel long noncoding RNA, SCAL1, induced by cigarette smoke and elevated in lung cancer cell lines., Am. J. Respir. Cell Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARRDC3-1:18
4.0 LUCAT1:5
4.1 LUCAT1:5
5.0 LUCAT1:5
5.1 LUCAT1:5
5.2 LUCAT1:5