Transcript: LUCAT1:6

Basic information

LNCipedia transcript ID: LUCAT1:6 
LNCipedia gene ID: LUCAT1
Ensembl Gene ID: ENSG00000271762
Ensembl Transcript ID: ENST00000607854
Location (hg19): chr5:90608874-90610219
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607854.1
Alternative gene names: ENSG00000271762.1; RP11-213H15.4; SCAL1; AC123595.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.2 non-coding 
CPAT coding probability 14.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LUCAT1:6 no no no no

Available literature

  1. Thai (2013), Characterization of a novel long noncoding RNA, SCAL1, induced by cigarette smoke and elevated in lung cancer cell lines., Am. J. Respir. Cell Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARRDC3-1:17
4.0 LUCAT1:6
4.1 LUCAT1:6
5.0 LUCAT1:6
5.1 LUCAT1:6
5.2 LUCAT1:6