Transcript: LY6E-DT:33

Basic information

LNCipedia transcript ID: LY6E-DT:33 
LNCipedia gene ID: LY6E-DT
RefSeq ID: NR_026913
Location (hg19): chr8:144063448-144099807
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 702 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026913; NR_026913.1
Alternative gene names: LOC100133669


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.7381 non-coding 
CPAT coding probability 61.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LY6E-DT:33 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP11B2-1:6
4.0 lnc-CYP11B2-1:6
4.1 lnc-CYP11B2-1:6
5.0 lnc-CYP11B2-1:6
5.1 LY6E-DT:14
5.2 LY6E-DT:33