Transcript: MAFA-AS1:2

Basic information

LNCipedia transcript ID: MAFA-AS1:2 
HGNC Gene Symbol: MAFA-AS1    
HGNC Full Gene Name: MAFA antisense RNA 1
Ensembl Gene ID: ENSG00000254338
Ensembl Transcript ID: ENST00000519762
RefSeq ID: NR_126358
Location (hg19): chr8:144499849-144501320
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 417 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000519762.1; RP11-909N17.3-001; OTTHUMT00000381460.1; NR_126358; NR_126358.1
Alternative gene names: ENSG00000254338.1; RP11-909N17.3; OTTHUMG00000165017.1; MAFA-AS1; TCONS_00014882


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.8488 non-coding 
CPAT coding probability 20.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFA-AS1:2 no no no no

Available literature

  1. Xu (2014), Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHPN1-3:2
4.0 MAFA-AS1:2
4.1 MAFA-AS1:2
5.0 MAFA-AS1:2
5.1 MAFA-AS1:2
5.2 MAFA-AS1:2