Transcript: MAFA-AS1:5

Basic information

LNCipedia transcript ID: MAFA-AS1:5 
LNCipedia gene ID: MAFA-AS1
Location (hg19): chr8:144490374-144501643
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5339 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254338.1|ENCT00000431154.1
Alternative gene names: RP11-909N17.3; TCONS_00014882


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 48.8508 non-coding 
CPAT coding probability 11.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAFA-AS1:5 yes no no no

Available literature

  1. Xu (2014), Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAFA-AS1:5
5.0 MAFA-AS1:5
5.1 MAFA-AS1:5
5.2 MAFA-AS1:5