Transcript: MAFG-DT:16

Basic information

LNCipedia transcript ID: MAFG-DT:16 
LNCipedia gene ID: MAFG-DT
Location (hg19): chr17:79885723-79890261
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3363 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000265688.1|ENCT00000179190.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.5584 non-coding 
CPAT coding probability 56.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAFG-DT:16 yes no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAFG-AS1:9
5.0 MAFG-AS1:9
5.1 MAFG-DT:5
5.2 MAFG-DT:16