Transcript: MAFG-DT:20

Basic information

LNCipedia transcript ID: MAFG-DT:20 
LNCipedia gene ID: MAFG-DT
Location (hg19): chr17:79885843-79888628
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1754 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025525; NONHSAT056599
Alternative gene names: XLOC_012342; linc-ASPSCR1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5584 non-coding 
CPAT coding probability 34.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFG-DT:20 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPB-1:2
3.1 lnc-NPB-2:3
4.0 MAFG-AS1:4
4.1 MAFG-AS1:4
5.0 MAFG-AS1:4
5.1 MAFG-DT:10
5.2 MAFG-DT:20