Transcript: MAGEA8-AS1:1

Basic information

LNCipedia transcript ID: MAGEA8-AS1:1 
LNCipedia gene ID: MAGEA8-AS1
RefSeq ID: NR_102703
Location (hg19): chrX:149007563-149025779
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 596 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT138951; NR_102703; NR_102703.1
Alternative gene names: RP5-869M20.2; MAGEA8-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.5208 non-coding 
CPAT coding probability 5.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAGEA8-AS1:1 no no no no

Available literature

  1. Tran (2013), Molecular characterization of an X(p21.2;q28) chromosomal inversion in a Duchenne muscular dystrophy patient with mental retardation reveals a novel long non-coding gene on Xq28., J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXorf40B-1:2
4.0 MAGEA8-AS1:1
4.1 MAGEA8-AS1:1
5.0 MAGEA8-AS1:1
5.1 MAGEA8-AS1:1
5.2 MAGEA8-AS1:1