Transcript: MAGEA8-AS1:2

Basic information

LNCipedia transcript ID: MAGEA8-AS1:2 
HGNC Gene Symbol: MAGEA8-AS1    
HGNC Full Gene Name: MAGEA8 antisense RNA 1
Ensembl Gene ID: ENSG00000230899
Ensembl Transcript ID: ENST00000427671
Location (hg19): chrX:149007636-149009870
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 476 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427671.1; RP5-869M20.2-001; OTTHUMT00000058727.1; NONHSAT138952
Alternative gene names: ENSG00000230899.1; RP5-869M20.2; OTTHUMG00000022634.1; MAGEA8-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4072 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAGEA8-AS1:2 no no no no

Available literature

  1. Tran (2013), Molecular characterization of an X(p21.2;q28) chromosomal inversion in a Duchenne muscular dystrophy patient with mental retardation reveals a novel long non-coding gene on Xq28., J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXorf40B-1:1
4.0 MAGEA8-AS1:2
4.1 MAGEA8-AS1:2
5.0 MAGEA8-AS1:2
5.1 MAGEA8-AS1:2
5.2 MAGEA8-AS1:2