Transcript: MAGI2-AS3:24

Basic information

LNCipedia transcript ID: MAGI2-AS3:24 
HGNC Gene Symbol: MAGI2-AS3    
HGNC Full Gene Name: MAGI2 antisense RNA 3
Ensembl Gene ID: ENSG00000234456
Ensembl Transcript ID: ENST00000448195
Location (hg19): chr7:79083328-79100364
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 774 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448195.1; MAGI2-AS3-005; OTTHUMT00000340238.1; ENST00000448195.5
Alternative gene names: ENSG00000234456.2; MAGI2-AS3; OTTHUMG00000155465.1; ENSG00000234456.3; ENSG00000234456.7; ; ENST00000414797


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -243.92 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAGI2-AS3:24 no no no no

Available literature

  1. Yang (2018), Long non-coding RNA (lncRNA) MAGI2-AS3 inhibits breast cancer cell growth by targeting the Fas/FasL signalling pathway., Hum. Cell
  2. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta
  3. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  4. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNAI1-2:7
4.0 MAGI2-AS3:24
4.1 MAGI2-AS3:24
5.0 MAGI2-AS3:24
5.1 MAGI2-AS3:24
5.2 MAGI2-AS3:24