Transcript: MALAT1:20

Basic information

LNCipedia transcript ID: MALAT1:20 
HGNC Gene Symbol: MALAT1    
HGNC Full Gene Name: metastasis associated lung adenocarcinoma transcript 1
Ensembl Gene ID: ENSG00000251562
Ensembl Transcript ID: ENST00000620902
Location (hg19): chr11:65266513-65267177
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 352 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620902.1
Alternative gene names: ENSG00000251562.7; MALAT1; PRO1073; MALAT-1; NCRNA00047; HCN; NEAT2; LINC00047; mascRNA; ENSG00000251562.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MALAT1:20 no no no no

Available literature

  1. Arun (2016), Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss., Genes Dev.
  2. Briese (2016), Whole transcriptome profiling reveals the RNA content of motor axons., Nucleic Acids Res.
  3. Cai (2016), Long noncoding RNA MALAT1 as a potential therapeutic target in osteosarcoma., J. Orthop. Res.
  4. Choudhry (2016), Hypoxic regulation of the noncoding genome and NEAT1., Brief Funct Genomics
  5. Han (2016), Downregulation of lncRNA-MALAT1 Affects Proliferation and the Expression of Stemness Markers in Glioma Stem Cell Line SHG139S., Cell. Mol. Neurobiol.
  6. Jin (2016), Detection of the long noncoding RNAs nuclear-enriched autosomal transcript 1 (NEAT1) and metastasis associated lung adenocarcinoma transcript 1 in the peripheral blood of HIV-1-infected patients., HIV Med.
  7. Jin (2016), The role of MALAT1/miR-1/slug axis on radioresistance in nasopharyngeal carcinoma., Tumour Biol.
  8. Jin (2016), Reciprocal regulation of Hsa-miR-1 and long noncoding RNA MALAT1 promotes triple-negative breast cancer development., Tumour Biol.
  9. Konishi (2016), Plasma level of metastasis-associated lung adenocarcinoma transcript 1 is associated with liver damage and predicts development of hepatocellular carcinoma., Cancer Sci.
  10. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 MALAT1:20
4.1 MALAT1:20
5.0 MALAT1:20
5.1 MALAT1:20
5.2 MALAT1:20

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