Transcript: MALINC1:42

Basic information

LNCipedia transcript ID: MALINC1:42 
LNCipedia gene ID: MALINC1
Location (hg19): chr5:139481824-139493707
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4110 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT104139
Alternative gene names: MA-linc1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.188 non-coding 
CPAT coding probability 43.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MALINC1:42 yes no no no

Available literature

  1. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRG2-1:8
4.0 LINC01024:1
4.1 LINC01024:1
5.0 LINC01024:1
5.1 MALINC1:4
5.2 MALINC1:42