Transcript: MALINC1:53

Basic information

LNCipedia transcript ID: MALINC1:53 
LNCipedia gene ID: MALINC1
Location (hg19): chr5:139482725-139488190
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1548 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245146.2|FTMT21700012072.1
Alternative gene names: MA-linc1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.188 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MALINC1:53 yes no no no

Available literature

  1. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01024:26
5.0 LINC01024:26
5.1 MALINC1:15
5.2 MALINC1:53