Transcript: MALINC1:65

Basic information

LNCipedia transcript ID: MALINC1:65 
LNCipedia gene ID: MALINC1
RefSeq ID: NR_102740
Location (hg19): chr5:139482507-139487597
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2501 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT104142; NR_102740; NR_102740.1
Alternative gene names: MA-linc1; LINC01024


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.188 non-coding 
CPAT coding probability 45.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MALINC1:65 yes no no no

Available literature

  1. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRG2-1:10
4.0 LINC01024:8
4.1 LINC01024:8
5.0 LINC01024:8
5.1 MALINC1:27
5.2 MALINC1:65