Transcript: MAMDC2-AS1:9

Basic information

LNCipedia transcript ID: MAMDC2-AS1:9 
LNCipedia gene ID: MAMDC2-AS1
Location (hg19): chr9:72702213-72728782
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 622 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000414515.1; RP11-195E11.2-001; OTTHUMT00000052595.1
Alternative gene names: ENSG00000237778.1; RP11-195E11.2; OTTHUMG00000019986.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.4388 non-coding 
CPAT coding probability 9.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAMDC2-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLF9-2:1
4.0 MAMDC2-AS1:9
4.1 MAMDC2-AS1:9
5.0 MAMDC2-AS1:9
5.1 MAMDC2-AS1:9
5.2 MAMDC2-AS1:9