Transcript: MAN1B1-DT:6

Basic information

LNCipedia transcript ID: MAN1B1-DT:6 
HGNC Gene Symbol: MAN1B1-DT    
HGNC Full Gene Name: MAN1B1 divergent transcript
Ensembl Gene ID: ENSG00000268996
Ensembl Transcript ID: ENST00000596585
RefSeq ID: NR_027447
Location (hg19): chr9:139979398-139981269
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1872 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027447; ENST00000596585.3; NR_027447.1
Alternative gene names: ENSG00000268996.3; MAN1B1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 67.0425 coding 
CPAT coding probability 53.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAN1B1-DT:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf140-1:2
4.0 MAN1B1-AS1:2
4.1 MAN1B1-AS1:2
5.0 MAN1B1-AS1:2
5.1 MAN1B1-DT:3
5.2 MAN1B1-DT:6