Transcript: MAPK6-DT:10

Basic information

LNCipedia transcript ID: MAPK6-DT:10 
LNCipedia gene ID: MAPK6-DT
Location (hg19): chr15:52309384-52311102
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1719 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1597:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.4348 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPK6-DT:10 no no no no

Available literature

  1. Huang (2018), LncMAPK6 drives MAPK6 expression and liver TIC self-renewal., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LEO1-3:2
4.1 lnc-LEO1-3:2
5.0 lnc-LEO1-3:2
5.1 MAPK6-DT:5
5.2 MAPK6-DT:10