Transcript: MAPK6-DT:11

Basic information

LNCipedia transcript ID: MAPK6-DT:11 
LNCipedia gene ID: MAPK6-DT
Ensembl Gene ID: ENSG00000274528
Ensembl Transcript ID: ENST00000612566
Location (hg19): chr15:52309364-52310229
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 866 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612566.1
Alternative gene names: ENSG00000274528.1; CTD-2650P22.2; AC090970.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.4348 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPK6-DT:11 no no no no

Available literature

  1. Huang (2018), LncMAPK6 drives MAPK6 expression and liver TIC self-renewal., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LEO1-3:3
4.1 lnc-LEO1-3:3
5.0 lnc-LEO1-3:3
5.1 MAPK6-DT:6
5.2 MAPK6-DT:11