Transcript: MAPK6-DT:7

Basic information

LNCipedia transcript ID: MAPK6-DT:7 
LNCipedia gene ID: MAPK6-DT
Location (hg19): chr15:52303196-52311303
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 876 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259438.1|ENST00000561318.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -67.0158 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPK6-DT:7 no no no no

Available literature

  1. Huang (2018), LncMAPK6 drives MAPK6 expression and liver TIC self-renewal., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LEO1-3:4
5.0 lnc-LEO1-3:4
5.1 MAPK6-DT:2
5.2 MAPK6-DT:7