Transcript: MAPKAPK5-AS1:11

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:11 
LNCipedia gene ID: MAPKAPK5-AS1
Location (hg19): chr12:112277583-112279752
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 943 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020931; NONHSAT030764
Alternative gene names: XLOC_010202; linc-BRAP-2; FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7169 non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPKAPK5-AS1:11 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM116-2:7
3.1 lnc-TMEM116-2:7
4.0 MAPKAPK5-AS1:11
4.1 MAPKAPK5-AS1:11
5.0 MAPKAPK5-AS1:11
5.1 MAPKAPK5-AS1:11
5.2 MAPKAPK5-AS1:11