Transcript: MAPKAPK5-AS1:2

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:2 
LNCipedia gene ID: MAPKAPK5-AS1
RefSeq ID: NR_015404
Location (hg19): chr12:112277573-112280706
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2285 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000428207; ENST00000428207.1; MAPKAPK5-AS1-001; OTTHUMT00000280462.1; NONHSAT030758; NR_015404; NR_015404.1
Alternative gene names: ENSG00000234608; AC003029.1; ENSG00000234608.1; MAPKAPK5-AS1; OTTHUMG00000141273.1; ENSG00000234608.3; FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -13.4534 non-coding 
CPAT coding probability 39.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAPKAPK5-AS1:2 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM116-2:2
3.1 lnc-TMEM116-2:1
4.0 MAPKAPK5-AS1:2
4.1 MAPKAPK5-AS1:2
5.0 MAPKAPK5-AS1:2
5.1 MAPKAPK5-AS1:2
5.2 MAPKAPK5-AS1:2