Transcript: MAPKAPK5-AS1:24

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:24 
LNCipedia gene ID: MAPKAPK5-AS1
Location (hg19): chr12:112277611-112279734
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 829 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234608.3|ENST00000609228.1
Alternative gene names: FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -113.2248 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPKAPK5-AS1:24 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAPKAPK5-AS1:24
5.0 MAPKAPK5-AS1:24
5.1 MAPKAPK5-AS1:24
5.2 MAPKAPK5-AS1:24