Transcript: MAPKAPK5-AS1:3

Basic information

LNCipedia transcript ID: MAPKAPK5-AS1:3 
HGNC Gene Symbol: MAPKAPK5-AS1    
HGNC Full Gene Name: MAPKAPK5 antisense RNA 1
Ensembl Gene ID: ENSG00000234608
Ensembl Transcript ID: ENST00000428207
Location (hg19): chr12:112277568-112280706
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2290 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428207.4
Alternative gene names: ENSG00000234608.7; MAPKAPK5-AS1; FLJ39616


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.4534 non-coding 
CPAT coding probability 39.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAPKAPK5-AS1:3 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 MAPKAPK5-AS1:3
4.1 MAPKAPK5-AS1:3
5.0 MAPKAPK5-AS1:3
5.1 MAPKAPK5-AS1:3
5.2 MAPKAPK5-AS1:3