Transcript: MAPT-AS1:1

Basic information

LNCipedia transcript ID: MAPT-AS1:1 
HGNC Gene Symbol: MAPT-AS1    
HGNC Full Gene Name: MAPT antisense RNA 1
Ensembl Gene ID: ENSG00000264589
Ensembl Transcript ID: ENST00000634876
Location (hg19): chr17:43876756-43972996
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3602 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634876.1
Alternative gene names: ENSG00000264589.2; MAPT-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.1907 non-coding 
CPAT coding probability 27.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPT-AS1:1 no no no no

Available literature

  1. Coupland (2016), Role of the Long Non-Coding RNA MAPT-AS1 in Regulation of Microtubule Associated Protein Tau (MAPT) Expression in Parkinson's Disease., PLoS ONE
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 MAPT-AS1:1
4.1 MAPT-AS1:1
5.0 MAPT-AS1:1
5.1 MAPT-AS1:1
5.2 MAPT-AS1:1