Transcript: MAPT-AS1:4

Basic information

LNCipedia transcript ID: MAPT-AS1:4 
LNCipedia gene ID: MAPT-AS1
RefSeq ID: NR_024559
Location (hg19): chr17:43920722-43972879
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 840 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054180; NR_024559; NR_024559.1
Alternative gene names: ; MAPT-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.0324 non-coding 
CPAT coding probability 5.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPT-AS1:4 no no no no

Available literature

  1. Coupland (2016), Role of the Long Non-Coding RNA MAPT-AS1 in Regulation of Microtubule Associated Protein Tau (MAPT) Expression in Parkinson's Disease., PLoS ONE
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1267-3:4
4.0 MAPT-AS1:4
4.1 MAPT-AS1:4
5.0 MAPT-AS1:4
5.1 MAPT-AS1:4
5.2 MAPT-AS1:4