Transcript: MAPT-AS1:7

Basic information

LNCipedia transcript ID: MAPT-AS1:7 
LNCipedia gene ID: MAPT-AS1
Location (hg19): chr17:43921017-43972996
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 662 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000264589.1|ENST00000579244.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -107.221 non-coding 
CPAT coding probability 6.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPT-AS1:7 no no no no

Available literature

  1. Coupland (2016), Role of the Long Non-Coding RNA MAPT-AS1 in Regulation of Microtubule Associated Protein Tau (MAPT) Expression in Parkinson's Disease., PLoS ONE
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MAPT-AS1:7
5.0 MAPT-AS1:7
5.1 MAPT-AS1:7
5.2 MAPT-AS1:7