Transcript: MAPT-IT1:1

Basic information

LNCipedia transcript ID: MAPT-IT1:1 
HGNC Gene Symbol: MAPT-IT1    
HGNC Full Gene Name: MAPT intronic transcript 1
Ensembl Gene ID: ENSG00000279685
Ensembl Transcript ID: ENST00000624111
RefSeq ID: NR_024560
Location (hg19): chr17:43973149-43976164
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3016 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT054183; NR_024560; ENST00000624111.2; NR_024560.1
Alternative gene names: ENSG00000279685.2; MAPT-IT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.0331 non-coding 
CPAT coding probability 29.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPT-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC217771.1-2:1
4.0 MAPT-IT1:1
4.1 MAPT-IT1:1
5.0 MAPT-IT1:1
5.1 MAPT-IT1:1
5.2 MAPT-IT1:1