Transcript: MCHR2-AS1:11

Basic information

LNCipedia transcript ID: MCHR2-AS1:11 
HGNC Gene Symbol: MCHR2-AS1    
HGNC Full Gene Name: MCHR2 antisense RNA 1
Ensembl Gene ID: ENSG00000229315
Ensembl Transcript ID: ENST00000452482
Location (hg19): chr6:100441942-100474260
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 821 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000452482; ENST00000452482.1; RP11-14I4.3-004; OTTHUMT00000041624.1; NONHSAT114146
Alternative gene names: ENSG00000229315; RP11-14I4.3; ENSG00000229315.1; OTTHUMG00000015271.1; ENSG00000229315.2; MCHR2-AS1; ENSG00000229315.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2064 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MCHR2-AS1:11 yes no no no

Available literature

  1. Delacrétaz (2015), Influence of MCHR2 and MCHR2-AS1 Genetic Polymorphisms on Body Mass Index in Psychiatric Patients and In Population-Based Subjects with Present or Past Atypical Depression., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM13-1:3
3.1 lnc-PRDM13-3:3
4.0 MCHR2-AS1:11
4.1 MCHR2-AS1:11
5.0 MCHR2-AS1:11
5.1 MCHR2-AS1:11
5.2 MCHR2-AS1:11